Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 1848
Total assembly length (Mbp) 36.38
Assembly GC content (%) 53.64
Assembly gaps (%) 0.02
L50 number (#) 114
N50 length (bp) 77759
Genes 12997
Gene length (median) 1206
Transcript length (median) 918
Exon length (median) 138
CDS length (median) 918
Protein length (median) 306
Spliced genes (total, %) 11064 (85.13%)
Exons per gene (median) 4
Intron length (median) 56
Introns per spliced gene (median) 4
Gene density (genes / Mbp) 357.29
Coding content of assembly (bp, %) 14586882 (40.1%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 3533
Genes with PFAM (total, %) 6751 (51.94%)
Genes with GO (total, %) 4216 (32.44%)
Genes with signalP (total, %) 709 (5.46%)
Genes with TMHMM (total, %) 1933 (14.87%)
Genes annotated as TF (total, %) 209 (1.61%)
Genes annotated as MEROPS protease (total, %) 357 (2.75%)
Genes annotated as CAZyme (total, %) 244 (1.88%)
Secondary metabolism gene cluster 14
CEGMA completeness (%) 98.03
BUSCO2 completeness (fungi_odb9) Complete: 92.07% (Single-copy: 90.69%, Duplicated: 1.38%), Fragmented: 5.52%, Missing: 2.41%

© 2020 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail