© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 1848 |
|---|---|
| Total assembly length (Mbp) | 36.38 |
| Assembly GC content (%) | 53.64 |
| Assembly gaps (%) | 0.02 |
| L50 number (#) | 114 |
| N50 length (bp) | 77759 |
| Genes | 12997 |
| Gene length (median) | 1206 |
| Transcript length (median) | 918 |
| Exon length (median) | 138 |
| CDS length (median) | 918 |
| Protein length (median) | 306 |
| Spliced genes (total, %) | 11064 (85.13%) |
| Exons per gene (median) | 4 |
| Intron length (median) | 56 |
| Introns per spliced gene (median) | 4 |
| Gene density (genes / Mbp) | 357.29 |
| Coding content of assembly (bp, %) | 14586882 (40.1%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 3583 |
| Genes with PFAM (total, %) | 6899 (53.08%) |
| Genes with GO (total, %) | 4084 (31.42%) |
| Genes with signalP (total, %) | 709 (5.46%) |
| Genes with TMHMM (total, %) | 1933 (14.87%) |
| Genes annotated as TF (total, %) | 203 (1.56%) |
| Genes annotated as MEROPS protease (total, %) | 357 (2.75%) |
| Genes annotated as CAZyme (total, %) | 244 (1.88%) |
| Secondary metabolism gene cluster | 13 |
| CEGMA completeness (%) | 98.03 |
| BUSCO2 completeness (fungi_odb9) | Complete: 92.07% (Single-copy: 90.69%, Duplicated: 1.38%), Fragmented: 5.52%, Missing: 2.41% |