Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 537
Total assembly length (Mbp) 30.48
Assembly GC content (%) 47.79
Assembly gaps (%) 0.01
L50 number (#) 22
N50 length (bp) 448327
Total repeats (#) 8724
Repetitive content (bp, %) 2083945 (6.84%)
Genes 10375
Gene length (median) 1374
Transcript length (median) 1212
Exon length (median) 227
CDS length (median) 1212
Protein length (median) 404
Spliced genes (total, %) 8304 (80.04%)
Exons per gene (median) 3
Intron length (median) 58
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 340.43
Coding content of assembly (bp, %) 15014985 (49.27%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 4069
Genes with PFAM (total, %) 7635 (73.59%)
Genes with GO (total, %) 4909 (47.32%)
Genes with signalP (total, %) 736 (7.09%)
Genes with TMHMM (total, %) 2079 (20.04%)
Genes annotated as TF (total, %) 422 (4.07%)
Genes annotated as MEROPS protease (total, %) 324 (3.12%)
Genes annotated as CAZyme (total, %) 389 (3.75%)
Secondary metabolism gene cluster 36
CEGMA completeness (%) 99.56
BUSCO2 completeness (fungi_odb9) Complete: 99.66% (Single-copy: 99.31%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.34%

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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