Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 594
Total assembly length (Mbp) 23.32
Assembly GC content (%) 53.13
Assembly gaps (%) 0.4
L50 number (#) 59
N50 length (bp) 112405
Total repeats (#) 12002
Repetitive content (bp, %) 652457 (2.8%)
Genes 8174
Gene length (median) 1363
Transcript length (median) 1227
Exon length (median) 268
CDS length (median) 1227
Protein length (median) 409
Spliced genes (total, %) 6258 (76.56%)
Exons per gene (median) 2
Intron length (median) 64
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 350.45
Coding content of assembly (bp, %) 12046312 (51.65%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 3832
Genes with PFAM (total, %) 5928 (72.52%)
Genes with GO (total, %) 3795 (46.43%)
Genes with signalP (total, %) 802 (9.81%)
Genes with TMHMM (total, %) 1537 (18.8%)
Genes annotated as TF (total, %) 243 (2.97%)
Genes annotated as MEROPS protease (total, %) 254 (3.11%)
Genes annotated as CAZyme (total, %) 234 (2.86%)
Secondary metabolism gene cluster 38
CEGMA completeness (%) 99.13
BUSCO2 completeness (fungi_odb9) Complete: 98.62% (Single-copy: 98.28%, Duplicated: 0.34%), Fragmented: 1.03%, Missing: 0.34%

© 2020 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail