© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 594 |
|---|---|
| Total assembly length (Mbp) | 23.32 |
| Assembly GC content (%) | 53.13 |
| Assembly gaps (%) | 0.4 |
| L50 number (#) | 59 |
| N50 length (bp) | 112405 |
| Total repeats (#) | 12002 |
| Repetitive content (bp, %) | 652457 (2.8%) |
| Genes | 8174 |
| Gene length (median) | 1363 |
| Transcript length (median) | 1227 |
| Exon length (median) | 268 |
| CDS length (median) | 1227 |
| Protein length (median) | 409 |
| Spliced genes (total, %) | 6258 (76.56%) |
| Exons per gene (median) | 2 |
| Intron length (median) | 64 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 350.45 |
| Coding content of assembly (bp, %) | 12046312 (51.65%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 3891 |
| Genes with PFAM (total, %) | 5943 (72.71%) |
| Genes with GO (total, %) | 3750 (45.88%) |
| Genes with signalP (total, %) | 802 (9.81%) |
| Genes with TMHMM (total, %) | 1537 (18.8%) |
| Genes annotated as TF (total, %) | 240 (2.94%) |
| Genes annotated as MEROPS protease (total, %) | 254 (3.11%) |
| Genes annotated as CAZyme (total, %) | 234 (2.86%) |
| Secondary metabolism gene cluster | 38 |
| CEGMA completeness (%) | 99.13 |
| BUSCO2 completeness (fungi_odb9) | Complete: 98.62% (Single-copy: 98.28%, Duplicated: 0.34%), Fragmented: 1.03%, Missing: 0.34% |