Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 84
Total assembly length (Mbp) 26.97
Assembly GC content (%) 48.24
Assembly gaps (%) 0.0
L50 number (#) 11
N50 length (bp) 683325
Total repeats (#) 5676
Repetitive content (bp, %) 835124 (3.1%)
Genes 9762
Gene length (median) 1394
Transcript length (median) 1239
Exon length (median) 223
CDS length (median) 1239
Protein length (median) 413
Spliced genes (total, %) 7907 (81.0%)
Exons per gene (median) 3
Intron length (median) 58
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 361.94
Coding content of assembly (bp, %) 14304381 (53.04%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 3994
Genes with PFAM (total, %) 7335 (75.14%)
Genes with GO (total, %) 4830 (49.48%)
Genes with signalP (total, %) 697 (7.14%)
Genes with TMHMM (total, %) 1979 (20.27%)
Genes annotated as TF (total, %) 419 (4.29%)
Genes annotated as MEROPS protease (total, %) 297 (3.04%)
Genes annotated as CAZyme (total, %) 370 (3.79%)
Secondary metabolism gene cluster 33
CEGMA completeness (%) 99.34
BUSCO2 completeness (fungi_odb9) Complete: 99.66% (Single-copy: 99.31%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.34%

© 2020 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail