© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 84 |
|---|---|
| Total assembly length (Mbp) | 26.97 |
| Assembly GC content (%) | 48.24 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 11 |
| N50 length (bp) | 683325 |
| Total repeats (#) | 6101 |
| Repetitive content (bp, %) | 1041027 (3.86%) |
| Genes | 9762 |
| Gene length (median) | 1394 |
| Transcript length (median) | 1239 |
| Exon length (median) | 223 |
| CDS length (median) | 1239 |
| Protein length (median) | 413 |
| Spliced genes (total, %) | 7907 (81.0%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 361.94 |
| Coding content of assembly (bp, %) | 14304381 (53.04%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4048 |
| Genes with PFAM (total, %) | 7361 (75.4%) |
| Genes with GO (total, %) | 4733 (48.48%) |
| Genes with signalP (total, %) | 697 (7.14%) |
| Genes with TMHMM (total, %) | 1979 (20.27%) |
| Genes annotated as TF (total, %) | 409 (4.19%) |
| Genes annotated as MEROPS protease (total, %) | 297 (3.04%) |
| Genes annotated as CAZyme (total, %) | 370 (3.79%) |
| Secondary metabolism gene cluster | 33 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.66% (Single-copy: 99.31%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.34% |