Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 60
Total assembly length (Mbp) 26.75
Assembly GC content (%) 48.39
Assembly gaps (%) 0.0
L50 number (#) 6
N50 length (bp) 1225265
Total repeats (#) 6095
Repetitive content (bp, %) 849916 (3.18%)
Genes 9724
Gene length (median) 1398
Transcript length (median) 1239
Exon length (median) 223
CDS length (median) 1239
Protein length (median) 413
Spliced genes (total, %) 7886 (81.1%)
Exons per gene (median) 3
Intron length (median) 58
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 363.51
Coding content of assembly (bp, %) 14277336 (53.37%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 4053
Genes with PFAM (total, %) 7354 (75.63%)
Genes with GO (total, %) 4735 (48.69%)
Genes with signalP (total, %) 696 (7.16%)
Genes with TMHMM (total, %) 1965 (20.21%)
Genes annotated as TF (total, %) 411 (4.23%)
Genes annotated as MEROPS protease (total, %) 298 (3.06%)
Genes annotated as CAZyme (total, %) 371 (3.82%)
Secondary metabolism gene cluster 33
CEGMA completeness (%) 99.56
BUSCO2 completeness (fungi_odb9) Complete: 100.0% (Single-copy: 99.66%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.0%

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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