Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

Downloads

The sequences and functional annotations for this organism are available for download. These links are automatically updated as new version of the functional annotations become available.

Genome and genes

• Genome assembly
  The genome sequence in fasta format.
• Gene features
  Locations of the predicted genes (including features like exons, coding sequences, etc) in GFF3 format.
• Genbank file
  Genome sequence and predicted genes in GenBank format. (NOTE: experimental)
• Proteins
  Protein (amino acid) sequences of the predicted genes in fasta format.
• Coding sequences
  Coding sequences (DNA) of the predicted genes in fasta format. The coding sequence spans from start codon to stop codon, excluding any introns.
• Transcripts
  Transcript sequences (DNA) of the predicted genes in fasta format. The transcript sequences are the coding sequences with UTR (untranslated regions), if those are present.
• Genes
  Genes sequences (DNA) of the predicted genes in fasta format. The gene sequences are the transcript sequences with introns, if those are present.
• Promoters
  Promoter sequences. The 2.5 kb region upstream of the start codon. If the gene is close to the edge of the sequence, then the promoter may be shorter.

Functional Annotations

• Summary
  Summary of the functional annotations of each protein. NOTE: this may take a few minutes to load, please be patient.
• PFAM domains
  Conserved domains
• GO
  Gene Ontology
• SignalP
  Predicted secretion signals (see the SignalP site for more information on how to interpret this)
• Transmembrane domains (TMHMM)
  Regions of the protein that are predicted to span a membrane
• Transcription factors
  Transcriptional regulators identified by their predicted DNA-binding PFAM domains
• Secondary metabolism
  Genes and gene clusters involved in secondary metabolism
• Carbohydrate-active enzymes (CAZymes)
• Proteases (MEROPS)

Download part of the genome

Name of sequence*

Start coordinate*

End coordinate*

File format*

Fasta Genbank

Publication

Please cite this paper when using data from this genome: