© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 60 |
|---|---|
| Total assembly length (Mbp) | 26.75 |
| Assembly GC content (%) | 48.39 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 6 |
| N50 length (bp) | 1225265 |
| Total repeats (#) | 6095 |
| Repetitive content (bp, %) | 849916 (3.18%) |
| Genes | 9724 |
| Gene length (median) | 1398 |
| Transcript length (median) | 1239 |
| Exon length (median) | 223 |
| CDS length (median) | 1239 |
| Protein length (median) | 413 |
| Spliced genes (total, %) | 7886 (81.1%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 363.51 |
| Coding content of assembly (bp, %) | 14277336 (53.37%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4053 |
| Genes with PFAM (total, %) | 7354 (75.63%) |
| Genes with GO (total, %) | 4735 (48.69%) |
| Genes with signalP (total, %) | 696 (7.16%) |
| Genes with TMHMM (total, %) | 1965 (20.21%) |
| Genes annotated as TF (total, %) | 411 (4.23%) |
| Genes annotated as MEROPS protease (total, %) | 298 (3.06%) |
| Genes annotated as CAZyme (total, %) | 371 (3.82%) |
| Secondary metabolism gene cluster | 33 |
| CEGMA completeness (%) | 99.56 |
| BUSCO2 completeness (fungi_odb9) | Complete: 100.0% (Single-copy: 99.66%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.0% |