Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 2297
Total assembly length (Mbp) 22.19
Assembly GC content (%) 53.48
Assembly gaps (%) 0.55
L50 number (#) 364
N50 length (bp) 17422
Total repeats (#) 11657
Repetitive content (bp, %) 533264 (2.4%)
Genes 7995
Gene length (median) 1313
Transcript length (median) 1182
Exon length (median) 290
CDS length (median) 1182
Protein length (median) 394
Spliced genes (total, %) 5952 (74.45%)
Exons per gene (median) 2
Intron length (median) 65
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 360.3
Coding content of assembly (bp, %) 11486006 (51.76%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 3769
Genes with PFAM (total, %) 5732 (71.69%)
Genes with GO (total, %) 3682 (46.05%)
Genes with signalP (total, %) 681 (8.52%)
Genes with TMHMM (total, %) 1469 (18.37%)
Genes annotated as TF (total, %) 229 (2.86%)
Genes annotated as MEROPS protease (total, %) 246 (3.08%)
Genes annotated as CAZyme (total, %) 232 (2.9%)
Secondary metabolism gene cluster 30
CEGMA completeness (%) 98.25
BUSCO2 completeness (fungi_odb9) Complete: 94.83% (Single-copy: 94.48%, Duplicated: 0.34%), Fragmented: 4.48%, Missing: 0.69%

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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