© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 2297 |
|---|---|
| Total assembly length (Mbp) | 22.19 |
| Assembly GC content (%) | 53.48 |
| Assembly gaps (%) | 0.55 |
| L50 number (#) | 364 |
| N50 length (bp) | 17422 |
| Total repeats (#) | 11657 |
| Repetitive content (bp, %) | 533264 (2.4%) |
| Genes | 7995 |
| Gene length (median) | 1313 |
| Transcript length (median) | 1182 |
| Exon length (median) | 290 |
| CDS length (median) | 1182 |
| Protein length (median) | 394 |
| Spliced genes (total, %) | 5952 (74.45%) |
| Exons per gene (median) | 2 |
| Intron length (median) | 65 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 360.3 |
| Coding content of assembly (bp, %) | 11486006 (51.76%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 3824 |
| Genes with PFAM (total, %) | 5745 (71.86%) |
| Genes with GO (total, %) | 3637 (45.49%) |
| Genes with signalP (total, %) | 681 (8.52%) |
| Genes with TMHMM (total, %) | 1469 (18.37%) |
| Genes annotated as TF (total, %) | 224 (2.8%) |
| Genes annotated as MEROPS protease (total, %) | 246 (3.08%) |
| Genes annotated as CAZyme (total, %) | 232 (2.9%) |
| Secondary metabolism gene cluster | 29 |
| CEGMA completeness (%) | 98.25 |
| BUSCO2 completeness (fungi_odb9) | Complete: 94.83% (Single-copy: 94.48%, Duplicated: 0.34%), Fragmented: 4.48%, Missing: 0.69% |