Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 16
Total assembly length (Mbp) 30.7
Assembly GC content (%) 46.64
Assembly gaps (%) 0.0
L50 number (#) 6
N50 length (bp) 1931181
Genes 11763
Gene length (median) 1482
Transcript length (median) 1182
Exon length (median) 125
CDS length (median) 1182
Protein length (median) 394
Spliced genes (total, %) 10291 (87.49%)
Exons per gene (median) 5
Intron length (median) 54
Introns per spliced gene (median) 5
Gene density (genes / Mbp) 383.13
Coding content of assembly (bp, %) 17239182 (56.15%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 3648
Genes with PFAM (total, %) 7265 (61.76%)
Genes with GO (total, %) 4611 (39.2%)
Genes with signalP (total, %) 735 (6.25%)
Genes with TMHMM (total, %) 2041 (17.35%)
Genes annotated as TF (total, %) 296 (2.52%)
Genes annotated as MEROPS protease (total, %) 518 (4.4%)
Genes annotated as CAZyme (total, %) 379 (3.22%)
Secondary metabolism gene cluster 16
CEGMA completeness (%) 99.34
BUSCO2 completeness (fungi_odb9) Complete: 96.55% (Single-copy: 95.52%, Duplicated: 1.03%), Fragmented: 2.76%, Missing: 0.69%

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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