© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 16 |
|---|---|
| Total assembly length (Mbp) | 30.7 |
| Assembly GC content (%) | 46.64 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 6 |
| N50 length (bp) | 1931181 |
| Genes | 11763 |
| Gene length (median) | 1482 |
| Transcript length (median) | 1182 |
| Exon length (median) | 125 |
| CDS length (median) | 1182 |
| Protein length (median) | 394 |
| Spliced genes (total, %) | 10291 (87.49%) |
| Exons per gene (median) | 5 |
| Intron length (median) | 54 |
| Introns per spliced gene (median) | 5 |
| Gene density (genes / Mbp) | 383.13 |
| Coding content of assembly (bp, %) | 17239182 (56.15%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 3710 |
| Genes with PFAM (total, %) | 7447 (63.31%) |
| Genes with GO (total, %) | 4482 (38.1%) |
| Genes with signalP (total, %) | 735 (6.25%) |
| Genes with TMHMM (total, %) | 2041 (17.35%) |
| Genes annotated as TF (total, %) | 299 (2.54%) |
| Genes annotated as MEROPS protease (total, %) | 518 (4.4%) |
| Genes annotated as CAZyme (total, %) | 379 (3.22%) |
| Secondary metabolism gene cluster | 15 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 96.55% (Single-copy: 95.52%, Duplicated: 1.03%), Fragmented: 2.76%, Missing: 0.69% |