© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 318 |
|---|---|
| Total assembly length (Mbp) | 38.95 |
| Assembly GC content (%) | 49.06 |
| Assembly gaps (%) | 0.01 |
| L50 number (#) | 20 |
| N50 length (bp) | 579860 |
| Total repeats (#) | 15755 |
| Repetitive content (bp, %) | 1645873 (4.23%) |
| Genes | 11015 |
| Gene length (median) | 1431 |
| Transcript length (median) | 1281 |
| Exon length (median) | 298 |
| CDS length (median) | 1278 |
| Protein length (median) | 426 |
| Spliced genes (total, %) | 8160 (74.08%) |
| Exons per gene (median) | 2 |
| Intron length (median) | 66 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 282.79 |
| Coding content of assembly (bp, %) | 17306514 (44.43%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4118 |
| Genes with PFAM (total, %) | 8226 (74.68%) |
| Genes with GO (total, %) | 5142 (46.68%) |
| Genes with signalP (total, %) | 970 (8.81%) |
| Genes with TMHMM (total, %) | 2063 (18.73%) |
| Genes annotated as TF (total, %) | 437 (3.97%) |
| Genes annotated as MEROPS protease (total, %) | 438 (3.98%) |
| Genes annotated as CAZyme (total, %) | 430 (3.9%) |
| Secondary metabolism gene cluster | 58 |
| CEGMA completeness (%) | 99.13 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.66% (Single-copy: 99.66%, Duplicated: 0.0%), Fragmented: 0.34%, Missing: 0.0% |