Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 101
Total assembly length (Mbp) 28.07
Assembly GC content (%) 48.14
Assembly gaps (%) 0.0
L50 number (#) 10
N50 length (bp) 755013
Total repeats (#) 6492
Repetitive content (bp, %) 1041526 (3.71%)
Genes 9962
Gene length (median) 1391
Transcript length (median) 1233
Exon length (median) 225
CDS length (median) 1233
Protein length (median) 411
Spliced genes (total, %) 8025 (80.56%)
Exons per gene (median) 3
Intron length (median) 58
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 354.93
Coding content of assembly (bp, %) 14542335 (51.81%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 4058
Genes with PFAM (total, %) 7473 (75.02%)
Genes with GO (total, %) 4798 (48.16%)
Genes with signalP (total, %) 700 (7.03%)
Genes with TMHMM (total, %) 1997 (20.05%)
Genes annotated as TF (total, %) 418 (4.2%)
Genes annotated as MEROPS protease (total, %) 309 (3.1%)
Genes annotated as CAZyme (total, %) 381 (3.82%)
Secondary metabolism gene cluster 33
CEGMA completeness (%) 99.56
BUSCO2 completeness (fungi_odb9) Complete: 99.31% (Single-copy: 98.97%, Duplicated: 0.34%), Fragmented: 0.34%, Missing: 0.34%

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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