© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 101 |
|---|---|
| Total assembly length (Mbp) | 28.07 |
| Assembly GC content (%) | 48.14 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 10 |
| N50 length (bp) | 755013 |
| Total repeats (#) | 6492 |
| Repetitive content (bp, %) | 1041526 (3.71%) |
| Genes | 9962 |
| Gene length (median) | 1391 |
| Transcript length (median) | 1233 |
| Exon length (median) | 225 |
| CDS length (median) | 1233 |
| Protein length (median) | 411 |
| Spliced genes (total, %) | 8025 (80.56%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 354.93 |
| Coding content of assembly (bp, %) | 14542335 (51.81%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4058 |
| Genes with PFAM (total, %) | 7473 (75.02%) |
| Genes with GO (total, %) | 4798 (48.16%) |
| Genes with signalP (total, %) | 700 (7.03%) |
| Genes with TMHMM (total, %) | 1997 (20.05%) |
| Genes annotated as TF (total, %) | 418 (4.2%) |
| Genes annotated as MEROPS protease (total, %) | 309 (3.1%) |
| Genes annotated as CAZyme (total, %) | 381 (3.82%) |
| Secondary metabolism gene cluster | 33 |
| CEGMA completeness (%) | 99.56 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.31% (Single-copy: 98.97%, Duplicated: 0.34%), Fragmented: 0.34%, Missing: 0.34% |