Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 54
Total assembly length (Mbp) 26.53
Assembly GC content (%) 48.44
Assembly gaps (%) 0.0
L50 number (#) 8
N50 length (bp) 1110228
Total repeats (#) 5958
Repetitive content (bp, %) 987543 (3.72%)
Genes 9633
Gene length (median) 1401
Transcript length (median) 1242
Exon length (median) 225
CDS length (median) 1242
Protein length (median) 414
Spliced genes (total, %) 7821 (81.19%)
Exons per gene (median) 3
Intron length (median) 58
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 363.05
Coding content of assembly (bp, %) 14218737 (53.59%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 4045
Genes with PFAM (total, %) 7334 (76.13%)
Genes with GO (total, %) 4731 (49.11%)
Genes with signalP (total, %) 694 (7.2%)
Genes with TMHMM (total, %) 1975 (20.5%)
Genes annotated as TF (total, %) 410 (4.26%)
Genes annotated as MEROPS protease (total, %) 294 (3.05%)
Genes annotated as CAZyme (total, %) 361 (3.75%)
Secondary metabolism gene cluster 36
CEGMA completeness (%) 99.34
BUSCO2 completeness (fungi_odb9) Complete: 99.66% (Single-copy: 99.31%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.34%

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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