© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 59 |
|---|---|
| Total assembly length (Mbp) | 26.54 |
| Assembly GC content (%) | 48.43 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 9 |
| N50 length (bp) | 1032236 |
| Total repeats (#) | 6014 |
| Repetitive content (bp, %) | 943144 (3.55%) |
| Genes | 9639 |
| Gene length (median) | 1401 |
| Transcript length (median) | 1242 |
| Exon length (median) | 225 |
| CDS length (median) | 1242 |
| Protein length (median) | 414 |
| Spliced genes (total, %) | 7822 (81.15%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 363.24 |
| Coding content of assembly (bp, %) | 14228181 (53.62%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4046 |
| Genes with PFAM (total, %) | 7338 (76.13%) |
| Genes with GO (total, %) | 4734 (49.11%) |
| Genes with signalP (total, %) | 695 (7.21%) |
| Genes with TMHMM (total, %) | 1973 (20.47%) |
| Genes annotated as TF (total, %) | 411 (4.26%) |
| Genes annotated as MEROPS protease (total, %) | 294 (3.05%) |
| Genes annotated as CAZyme (total, %) | 363 (3.77%) |
| Secondary metabolism gene cluster | 35 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.66% (Single-copy: 99.31%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.34% |