© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 186 |
|---|---|
| Total assembly length (Mbp) | 28.53 |
| Assembly GC content (%) | 47.92 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 13 |
| N50 length (bp) | 678050 |
| Total repeats (#) | 6845 |
| Repetitive content (bp, %) | 1104592 (3.87%) |
| Genes | 9978 |
| Gene length (median) | 1389 |
| Transcript length (median) | 1228 |
| Exon length (median) | 225 |
| CDS length (median) | 1228 |
| Protein length (median) | 409 |
| Spliced genes (total, %) | 8058 (80.76%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 349.79 |
| Coding content of assembly (bp, %) | 14549430 (51.0%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4058 |
| Genes with PFAM (total, %) | 7466 (74.82%) |
| Genes with GO (total, %) | 4794 (48.05%) |
| Genes with signalP (total, %) | 710 (7.12%) |
| Genes with TMHMM (total, %) | 1995 (19.99%) |
| Genes annotated as TF (total, %) | 409 (4.1%) |
| Genes annotated as MEROPS protease (total, %) | 305 (3.06%) |
| Genes annotated as CAZyme (total, %) | 370 (3.71%) |
| Secondary metabolism gene cluster | 32 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.66% (Single-copy: 99.31%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.34% |