Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 47
Total assembly length (Mbp) 27.24
Assembly GC content (%) 48.13
Assembly gaps (%) 0.0
L50 number (#) 5
N50 length (bp) 1526950
Total repeats (#) 6236
Repetitive content (bp, %) 975166 (3.58%)
Genes 9760
Gene length (median) 1395
Transcript length (median) 1236
Exon length (median) 224
CDS length (median) 1236
Protein length (median) 412
Spliced genes (total, %) 7897 (80.91%)
Exons per gene (median) 3
Intron length (median) 58
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 358.31
Coding content of assembly (bp, %) 14316483 (52.56%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 4048
Genes with PFAM (total, %) 7371 (75.52%)
Genes with GO (total, %) 4743 (48.6%)
Genes with signalP (total, %) 695 (7.12%)
Genes with TMHMM (total, %) 1978 (20.27%)
Genes annotated as TF (total, %) 416 (4.26%)
Genes annotated as MEROPS protease (total, %) 298 (3.05%)
Genes annotated as CAZyme (total, %) 372 (3.81%)
Secondary metabolism gene cluster 32
CEGMA completeness (%) 99.34
BUSCO2 completeness (fungi_odb9) Complete: 99.66% (Single-copy: 99.31%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.34%

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail