© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Sequences in assembly | 47 |
|---|---|
| Total assembly length (Mbp) | 27.24 |
| Assembly GC content (%) | 48.13 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 5 |
| N50 length (bp) | 1526950 |
| Total repeats (#) | 6236 |
| Repetitive content (bp, %) | 975166 (3.58%) |
| Genes | 9760 |
| Gene length (median) | 1395 |
| Transcript length (median) | 1236 |
| Exon length (median) | 224 |
| CDS length (median) | 1236 |
| Protein length (median) | 412 |
| Spliced genes (total, %) | 7897 (80.91%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 358.31 |
| Coding content of assembly (bp, %) | 14316483 (52.56%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4048 |
| Genes with PFAM (total, %) | 7371 (75.52%) |
| Genes with GO (total, %) | 4743 (48.6%) |
| Genes with signalP (total, %) | 695 (7.12%) |
| Genes with TMHMM (total, %) | 1978 (20.27%) |
| Genes annotated as TF (total, %) | 416 (4.26%) |
| Genes annotated as MEROPS protease (total, %) | 298 (3.05%) |
| Genes annotated as CAZyme (total, %) | 372 (3.81%) |
| Secondary metabolism gene cluster | 32 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.66% (Single-copy: 99.31%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.34% |