Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 143
Total assembly length (Mbp) 28.8
Assembly GC content (%) 48.15
Assembly gaps (%) 0.0
L50 number (#) 12
N50 length (bp) 916447
Total repeats (#) 7186
Repetitive content (bp, %) 1403192 (4.87%)
Genes 10098
Gene length (median) 1381
Transcript length (median) 1222
Exon length (median) 226
CDS length (median) 1222
Protein length (median) 407
Spliced genes (total, %) 8141 (80.62%)
Exons per gene (median) 3
Intron length (median) 58
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 350.6
Coding content of assembly (bp, %) 14695794 (51.02%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 4072
Genes with PFAM (total, %) 7513 (74.4%)
Genes with GO (total, %) 4811 (47.64%)
Genes with signalP (total, %) 711 (7.04%)
Genes with TMHMM (total, %) 1999 (19.8%)
Genes annotated as TF (total, %) 417 (4.13%)
Genes annotated as MEROPS protease (total, %) 302 (2.99%)
Genes annotated as CAZyme (total, %) 380 (3.76%)
Secondary metabolism gene cluster 33
CEGMA completeness (%) 99.34
BUSCO2 completeness (fungi_odb9) Complete: 99.66% (Single-copy: 99.31%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.34%

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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