© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 143 |
|---|---|
| Total assembly length (Mbp) | 28.8 |
| Assembly GC content (%) | 48.15 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 12 |
| N50 length (bp) | 916447 |
| Total repeats (#) | 7186 |
| Repetitive content (bp, %) | 1403192 (4.87%) |
| Genes | 10098 |
| Gene length (median) | 1381 |
| Transcript length (median) | 1222 |
| Exon length (median) | 226 |
| CDS length (median) | 1222 |
| Protein length (median) | 407 |
| Spliced genes (total, %) | 8141 (80.62%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 350.6 |
| Coding content of assembly (bp, %) | 14695794 (51.02%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4072 |
| Genes with PFAM (total, %) | 7513 (74.4%) |
| Genes with GO (total, %) | 4811 (47.64%) |
| Genes with signalP (total, %) | 711 (7.04%) |
| Genes with TMHMM (total, %) | 1999 (19.8%) |
| Genes annotated as TF (total, %) | 417 (4.13%) |
| Genes annotated as MEROPS protease (total, %) | 302 (2.99%) |
| Genes annotated as CAZyme (total, %) | 380 (3.76%) |
| Secondary metabolism gene cluster | 33 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.66% (Single-copy: 99.31%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.34% |