© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 657 |
|---|---|
| Total assembly length (Mbp) | 31.74 |
| Assembly GC content (%) | 47.49 |
| Assembly gaps (%) | 0.01 |
| L50 number (#) | 27 |
| N50 length (bp) | 320526 |
| Total repeats (#) | 9482 |
| Repetitive content (bp, %) | 2354005 (7.42%) |
| Genes | 10644 |
| Gene length (median) | 1362 |
| Transcript length (median) | 1200 |
| Exon length (median) | 229 |
| CDS length (median) | 1200 |
| Protein length (median) | 400 |
| Spliced genes (total, %) | 8464 (79.52%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 335.36 |
| Coding content of assembly (bp, %) | 15280485 (48.14%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4082 |
| Genes with PFAM (total, %) | 7764 (72.94%) |
| Genes with GO (total, %) | 4969 (46.68%) |
| Genes with signalP (total, %) | 734 (6.9%) |
| Genes with TMHMM (total, %) | 2059 (19.34%) |
| Genes annotated as TF (total, %) | 432 (4.06%) |
| Genes annotated as MEROPS protease (total, %) | 308 (2.89%) |
| Genes annotated as CAZyme (total, %) | 395 (3.71%) |
| Secondary metabolism gene cluster | 33 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 100.0% (Single-copy: 99.31%, Duplicated: 0.69%), Fragmented: 0.0%, Missing: 0.0% |