Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 581
Total assembly length (Mbp) 29.84
Assembly GC content (%) 47.89
Assembly gaps (%) 0.01
L50 number (#) 26
N50 length (bp) 298690
Total repeats (#) 7799
Repetitive content (bp, %) 1735443 (5.82%)
Genes 10341
Gene length (median) 1372
Transcript length (median) 1212
Exon length (median) 226
CDS length (median) 1212
Protein length (median) 404
Spliced genes (total, %) 8284 (80.11%)
Exons per gene (median) 3
Intron length (median) 58
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 346.56
Coding content of assembly (bp, %) 14948625 (50.1%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 4074
Genes with PFAM (total, %) 7638 (73.86%)
Genes with GO (total, %) 4885 (47.24%)
Genes with signalP (total, %) 742 (7.18%)
Genes with TMHMM (total, %) 2054 (19.86%)
Genes annotated as TF (total, %) 419 (4.05%)
Genes annotated as MEROPS protease (total, %) 308 (2.98%)
Genes annotated as CAZyme (total, %) 392 (3.79%)
Secondary metabolism gene cluster 34
CEGMA completeness (%) 99.56
BUSCO2 completeness (fungi_odb9) Complete: 99.31% (Single-copy: 98.62%, Duplicated: 0.69%), Fragmented: 0.69%, Missing: 0.0%

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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