© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 581 |
|---|---|
| Total assembly length (Mbp) | 29.84 |
| Assembly GC content (%) | 47.89 |
| Assembly gaps (%) | 0.01 |
| L50 number (#) | 26 |
| N50 length (bp) | 298690 |
| Total repeats (#) | 7799 |
| Repetitive content (bp, %) | 1735443 (5.82%) |
| Genes | 10341 |
| Gene length (median) | 1372 |
| Transcript length (median) | 1212 |
| Exon length (median) | 226 |
| CDS length (median) | 1212 |
| Protein length (median) | 404 |
| Spliced genes (total, %) | 8284 (80.11%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 346.56 |
| Coding content of assembly (bp, %) | 14948625 (50.1%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4074 |
| Genes with PFAM (total, %) | 7638 (73.86%) |
| Genes with GO (total, %) | 4885 (47.24%) |
| Genes with signalP (total, %) | 742 (7.18%) |
| Genes with TMHMM (total, %) | 2054 (19.86%) |
| Genes annotated as TF (total, %) | 419 (4.05%) |
| Genes annotated as MEROPS protease (total, %) | 308 (2.98%) |
| Genes annotated as CAZyme (total, %) | 392 (3.79%) |
| Secondary metabolism gene cluster | 34 |
| CEGMA completeness (%) | 99.56 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.31% (Single-copy: 98.62%, Duplicated: 0.69%), Fragmented: 0.69%, Missing: 0.0% |