© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 62 |
|---|---|
| Total assembly length (Mbp) | 27.33 |
| Assembly GC content (%) | 48.07 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 10 |
| N50 length (bp) | 939761 |
| Total repeats (#) | 6486 |
| Repetitive content (bp, %) | 1056275 (3.87%) |
| Genes | 9748 |
| Gene length (median) | 1394 |
| Transcript length (median) | 1236 |
| Exon length (median) | 223 |
| CDS length (median) | 1236 |
| Protein length (median) | 412 |
| Spliced genes (total, %) | 7902 (81.06%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 356.69 |
| Coding content of assembly (bp, %) | 14292207 (52.3%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4049 |
| Genes with PFAM (total, %) | 7361 (75.51%) |
| Genes with GO (total, %) | 4727 (48.49%) |
| Genes with signalP (total, %) | 694 (7.12%) |
| Genes with TMHMM (total, %) | 1983 (20.34%) |
| Genes annotated as TF (total, %) | 410 (4.21%) |
| Genes annotated as MEROPS protease (total, %) | 300 (3.08%) |
| Genes annotated as CAZyme (total, %) | 372 (3.82%) |
| Secondary metabolism gene cluster | 34 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.66% (Single-copy: 99.31%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.34% |