Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 93
Total assembly length (Mbp) 27.29
Assembly GC content (%) 48.32
Assembly gaps (%) 0.0
L50 number (#) 11
N50 length (bp) 889993
Total repeats (#) 6318
Repetitive content (bp, %) 1059964 (3.88%)
Genes 9817
Gene length (median) 1397
Transcript length (median) 1239
Exon length (median) 225
CDS length (median) 1239
Protein length (median) 413
Spliced genes (total, %) 7948 (80.96%)
Exons per gene (median) 3
Intron length (median) 58
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 359.79
Coding content of assembly (bp, %) 14428101 (52.88%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 4052
Genes with PFAM (total, %) 7401 (75.39%)
Genes with GO (total, %) 4755 (48.44%)
Genes with signalP (total, %) 695 (7.08%)
Genes with TMHMM (total, %) 1993 (20.3%)
Genes annotated as TF (total, %) 408 (4.16%)
Genes annotated as MEROPS protease (total, %) 299 (3.05%)
Genes annotated as CAZyme (total, %) 374 (3.81%)
Secondary metabolism gene cluster 33
CEGMA completeness (%) 99.56
BUSCO2 completeness (fungi_odb9) Complete: 99.66% (Single-copy: 99.31%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.34%

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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