© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 73 |
|---|---|
| Total assembly length (Mbp) | 27.07 |
| Assembly GC content (%) | 48.26 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 9 |
| N50 length (bp) | 831264 |
| Total repeats (#) | 6162 |
| Repetitive content (bp, %) | 1056280 (3.9%) |
| Genes | 9786 |
| Gene length (median) | 1392 |
| Transcript length (median) | 1236 |
| Exon length (median) | 224 |
| CDS length (median) | 1236 |
| Protein length (median) | 412 |
| Spliced genes (total, %) | 7933 (81.06%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 361.44 |
| Coding content of assembly (bp, %) | 14348814 (53.0%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4053 |
| Genes with PFAM (total, %) | 7386 (75.48%) |
| Genes with GO (total, %) | 4739 (48.43%) |
| Genes with signalP (total, %) | 694 (7.09%) |
| Genes with TMHMM (total, %) | 1971 (20.14%) |
| Genes annotated as TF (total, %) | 412 (4.21%) |
| Genes annotated as MEROPS protease (total, %) | 301 (3.08%) |
| Genes annotated as CAZyme (total, %) | 369 (3.77%) |
| Secondary metabolism gene cluster | 33 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.66% (Single-copy: 99.31%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.34% |