© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 158 |
|---|---|
| Total assembly length (Mbp) | 29.37 |
| Assembly GC content (%) | 48.11 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 15 |
| N50 length (bp) | 605270 |
| Total repeats (#) | 7721 |
| Repetitive content (bp, %) | 1632565 (5.56%) |
| Genes | 10280 |
| Gene length (median) | 1380 |
| Transcript length (median) | 1218 |
| Exon length (median) | 228 |
| CDS length (median) | 1218 |
| Protein length (median) | 406 |
| Spliced genes (total, %) | 8228 (80.04%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 350.02 |
| Coding content of assembly (bp, %) | 14924970 (50.82%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4075 |
| Genes with PFAM (total, %) | 7579 (73.73%) |
| Genes with GO (total, %) | 4873 (47.4%) |
| Genes with signalP (total, %) | 727 (7.07%) |
| Genes with TMHMM (total, %) | 2011 (19.56%) |
| Genes annotated as TF (total, %) | 421 (4.1%) |
| Genes annotated as MEROPS protease (total, %) | 309 (3.01%) |
| Genes annotated as CAZyme (total, %) | 385 (3.75%) |
| Secondary metabolism gene cluster | 33 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 100.0% (Single-copy: 99.66%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.0% |