© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 100 |
|---|---|
| Total assembly length (Mbp) | 27.97 |
| Assembly GC content (%) | 48.18 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 12 |
| N50 length (bp) | 612215 |
| Genes | 9996 |
| Gene length (median) | 1388 |
| Transcript length (median) | 1230 |
| Exon length (median) | 225 |
| CDS length (median) | 1230 |
| Protein length (median) | 410 |
| Spliced genes (total, %) | 8037 (80.4%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 357.39 |
| Coding content of assembly (bp, %) | 14589774 (52.16%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4060 |
| Genes with PFAM (total, %) | 7506 (75.09%) |
| Genes with GO (total, %) | 4810 (48.12%) |
| Genes with signalP (total, %) | 705 (7.05%) |
| Genes with TMHMM (total, %) | 2010 (20.11%) |
| Genes annotated as TF (total, %) | 417 (4.17%) |
| Genes annotated as MEROPS protease (total, %) | 307 (3.07%) |
| Genes annotated as CAZyme (total, %) | 374 (3.74%) |
| Secondary metabolism gene cluster | 33 |
| CEGMA completeness (%) | 99.56 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.66% (Single-copy: 99.31%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.34% |