© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 109 |
|---|---|
| Total assembly length (Mbp) | 27.97 |
| Assembly GC content (%) | 48.18 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 14 |
| N50 length (bp) | 674982 |
| Total repeats (#) | 6646 |
| Repetitive content (bp, %) | 1144193 (4.09%) |
| Genes | 9975 |
| Gene length (median) | 1389 |
| Transcript length (median) | 1230 |
| Exon length (median) | 225 |
| CDS length (median) | 1230 |
| Protein length (median) | 410 |
| Spliced genes (total, %) | 8031 (80.51%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 356.67 |
| Coding content of assembly (bp, %) | 14579952 (52.13%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4059 |
| Genes with PFAM (total, %) | 7495 (75.14%) |
| Genes with GO (total, %) | 4802 (48.14%) |
| Genes with signalP (total, %) | 706 (7.08%) |
| Genes with TMHMM (total, %) | 2007 (20.12%) |
| Genes annotated as TF (total, %) | 415 (4.16%) |
| Genes annotated as MEROPS protease (total, %) | 306 (3.07%) |
| Genes annotated as CAZyme (total, %) | 372 (3.73%) |
| Secondary metabolism gene cluster | 33 |
| CEGMA completeness (%) | 99.56 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.66% (Single-copy: 99.31%, Duplicated: 0.34%), Fragmented: 0.0%, Missing: 0.34% |