© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 134 |
|---|---|
| Total assembly length (Mbp) | 29.48 |
| Assembly GC content (%) | 47.75 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 14 |
| N50 length (bp) | 629276 |
| Total repeats (#) | 7750 |
| Repetitive content (bp, %) | 1742114 (5.91%) |
| Genes | 10135 |
| Gene length (median) | 1383 |
| Transcript length (median) | 1221 |
| Exon length (median) | 226 |
| CDS length (median) | 1221 |
| Protein length (median) | 407 |
| Spliced genes (total, %) | 8156 (80.47%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 58 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 343.8 |
| Coding content of assembly (bp, %) | 14721888 (49.94%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4066 |
| Genes with PFAM (total, %) | 7563 (74.62%) |
| Genes with GO (total, %) | 4856 (47.91%) |
| Genes with signalP (total, %) | 726 (7.16%) |
| Genes with TMHMM (total, %) | 2018 (19.91%) |
| Genes annotated as TF (total, %) | 421 (4.15%) |
| Genes annotated as MEROPS protease (total, %) | 315 (3.11%) |
| Genes annotated as CAZyme (total, %) | 390 (3.85%) |
| Secondary metabolism gene cluster | 33 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 99.66% (Single-copy: 98.97%, Duplicated: 0.69%), Fragmented: 0.0%, Missing: 0.34% |