Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 2206
Total assembly length (Mbp) 21.91
Assembly GC content (%) 56.1
Assembly gaps (%) 0.01
L50 number (#) 279
N50 length (bp) 23109
Total repeats (#) 13286
Repetitive content (bp, %) 1343788 (6.13%)
Genes 7621
Gene length (median) 1350
Transcript length (median) 1200
Exon length (median) 273
CDS length (median) 1200
Protein length (median) 400
Spliced genes (total, %) 5777 (75.8%)
Exons per gene (median) 2
Intron length (median) 60
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 347.89
Coding content of assembly (bp, %) 11245146 (51.33%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 3693
Genes with PFAM (total, %) 5336 (70.02%)
Genes with GO (total, %) 3453 (45.31%)
Genes with signalP (total, %) 840 (11.02%)
Genes with TMHMM (total, %) 1391 (18.25%)
Genes annotated as TF (total, %) 205 (2.69%)
Genes annotated as MEROPS protease (total, %) 242 (3.18%)
Genes annotated as CAZyme (total, %) 230 (3.02%)
Secondary metabolism gene cluster 32
CEGMA completeness (%) 98.69
BUSCO2 completeness (fungi_odb9) Complete: 90.69% (Single-copy: 90.34%, Duplicated: 0.34%), Fragmented: 6.55%, Missing: 2.76%

© 2020 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail