© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 2206 |
|---|---|
| Total assembly length (Mbp) | 21.91 |
| Assembly GC content (%) | 56.1 |
| Assembly gaps (%) | 0.01 |
| L50 number (#) | 279 |
| N50 length (bp) | 23109 |
| Total repeats (#) | 13286 |
| Repetitive content (bp, %) | 1343788 (6.13%) |
| Genes | 7621 |
| Gene length (median) | 1350 |
| Transcript length (median) | 1200 |
| Exon length (median) | 273 |
| CDS length (median) | 1200 |
| Protein length (median) | 400 |
| Spliced genes (total, %) | 5777 (75.8%) |
| Exons per gene (median) | 2 |
| Intron length (median) | 60 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 347.89 |
| Coding content of assembly (bp, %) | 11245146 (51.33%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 3730 |
| Genes with PFAM (total, %) | 5349 (70.19%) |
| Genes with GO (total, %) | 3423 (44.92%) |
| Genes with signalP (total, %) | 840 (11.02%) |
| Genes with TMHMM (total, %) | 1391 (18.25%) |
| Genes annotated as TF (total, %) | 201 (2.64%) |
| Genes annotated as MEROPS protease (total, %) | 242 (3.18%) |
| Genes annotated as CAZyme (total, %) | 230 (3.02%) |
| Secondary metabolism gene cluster | 32 |
| CEGMA completeness (%) | 98.69 |
| BUSCO2 completeness (fungi_odb9) | Complete: 90.69% (Single-copy: 90.34%, Duplicated: 0.34%), Fragmented: 6.55%, Missing: 2.76% |