Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 2537
Total assembly length (Mbp) 23.92
Assembly GC content (%) 55.92
Assembly gaps (%) 0.75
L50 number (#) 251
N50 length (bp) 27475
Total repeats (#) 20153
Repetitive content (bp, %) 1700362 (7.11%)
Genes 8629
Gene length (median) 1294
Transcript length (median) 1152
Exon length (median) 220
CDS length (median) 1149
Protein length (median) 383
Spliced genes (total, %) 6871 (79.63%)
Exons per gene (median) 3
Intron length (median) 62
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 360.69
Coding content of assembly (bp, %) 12181795 (50.92%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 3805
Genes with PFAM (total, %) 5733 (66.44%)
Genes with GO (total, %) 3633 (42.1%)
Genes with signalP (total, %) 914 (10.59%)
Genes with TMHMM (total, %) 1536 (17.8%)
Genes annotated as TF (total, %) 198 (2.29%)
Genes annotated as MEROPS protease (total, %) 248 (2.87%)
Genes annotated as CAZyme (total, %) 231 (2.68%)
Secondary metabolism gene cluster 29
CEGMA completeness (%) 99.13
BUSCO2 completeness (fungi_odb9) Complete: 95.52% (Single-copy: 95.17%, Duplicated: 0.34%), Fragmented: 3.1%, Missing: 1.38%

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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