© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 2537 |
|---|---|
| Total assembly length (Mbp) | 23.92 |
| Assembly GC content (%) | 55.92 |
| Assembly gaps (%) | 0.75 |
| L50 number (#) | 251 |
| N50 length (bp) | 27475 |
| Total repeats (#) | 20153 |
| Repetitive content (bp, %) | 1700362 (7.11%) |
| Genes | 8629 |
| Gene length (median) | 1294 |
| Transcript length (median) | 1152 |
| Exon length (median) | 220 |
| CDS length (median) | 1149 |
| Protein length (median) | 383 |
| Spliced genes (total, %) | 6871 (79.63%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 62 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 360.69 |
| Coding content of assembly (bp, %) | 12181795 (50.92%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 3847 |
| Genes with PFAM (total, %) | 5762 (66.77%) |
| Genes with GO (total, %) | 3606 (41.79%) |
| Genes with signalP (total, %) | 914 (10.59%) |
| Genes with TMHMM (total, %) | 1536 (17.8%) |
| Genes annotated as TF (total, %) | 194 (2.25%) |
| Genes annotated as MEROPS protease (total, %) | 248 (2.87%) |
| Genes annotated as CAZyme (total, %) | 231 (2.68%) |
| Secondary metabolism gene cluster | 29 |
| CEGMA completeness (%) | 99.13 |
| BUSCO2 completeness (fungi_odb9) | Complete: 95.52% (Single-copy: 95.17%, Duplicated: 0.34%), Fragmented: 3.1%, Missing: 1.38% |