Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 13
Total assembly length (Mbp) 30.47
Assembly GC content (%) 48.44
Assembly gaps (%) 0.0
L50 number (#) 4
N50 length (bp) 3776764
Genes 7455
Gene length (median) 1398
Transcript length (median) 1224
Exon length (median) 231
CDS length (median) 1224
Protein length (median) 408
Spliced genes (total, %) 6011 (80.63%)
Exons per gene (median) 3
Intron length (median) 61
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 244.7
Coding content of assembly (bp, %) 11111271 (36.47%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 3751
Genes with PFAM (total, %) 5463 (73.28%)
Genes with GO (total, %) 3515 (47.15%)
Genes with signalP (total, %) 801 (10.74%)
Genes with TMHMM (total, %) 1372 (18.4%)
Genes annotated as TF (total, %) 206 (2.76%)
Genes annotated as MEROPS protease (total, %) 243 (3.26%)
Genes annotated as CAZyme (total, %) 232 (3.11%)
Secondary metabolism gene cluster 25
CEGMA completeness (%) 98.91
BUSCO2 completeness (fungi_odb9) Complete: 98.62% (Single-copy: 97.59%, Duplicated: 1.03%), Fragmented: 1.03%, Missing: 0.34%

© 2020 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail