© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 13 |
|---|---|
| Total assembly length (Mbp) | 30.47 |
| Assembly GC content (%) | 48.44 |
| Assembly gaps (%) | 0.0 |
| L50 number (#) | 4 |
| N50 length (bp) | 3776764 |
| Genes | 7455 |
| Gene length (median) | 1398 |
| Transcript length (median) | 1224 |
| Exon length (median) | 231 |
| CDS length (median) | 1224 |
| Protein length (median) | 408 |
| Spliced genes (total, %) | 6011 (80.63%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 61 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 244.7 |
| Coding content of assembly (bp, %) | 11111271 (36.47%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 3795 |
| Genes with PFAM (total, %) | 5483 (73.55%) |
| Genes with GO (total, %) | 3489 (46.8%) |
| Genes with signalP (total, %) | 801 (10.74%) |
| Genes with TMHMM (total, %) | 1372 (18.4%) |
| Genes annotated as TF (total, %) | 203 (2.72%) |
| Genes annotated as MEROPS protease (total, %) | 243 (3.26%) |
| Genes annotated as CAZyme (total, %) | 232 (3.11%) |
| Secondary metabolism gene cluster | 25 |
| CEGMA completeness (%) | 98.91 |
| BUSCO2 completeness (fungi_odb9) | Complete: 98.62% (Single-copy: 97.59%, Duplicated: 1.03%), Fragmented: 1.03%, Missing: 0.34% |