Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 3401
Total assembly length (Mbp) 32.31
Assembly GC content (%) 60.35
Assembly gaps (%) 0.38
L50 number (#) 509
N50 length (bp) 17593
Total repeats (#) 25697
Repetitive content (bp, %) 1254626 (3.88%)
Genes 11275
Gene length (median) 1039
Transcript length (median) 900
Exon length (median) 266
CDS length (median) 900
Protein length (median) 300
Spliced genes (total, %) 7705 (68.34%)
Exons per gene (median) 2
Intron length (median) 71
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 348.92
Coding content of assembly (bp, %) 13071223 (40.45%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 3735
Genes with PFAM (total, %) 6383 (56.61%)
Genes with GO (total, %) 4011 (35.57%)
Genes with signalP (total, %) 1064 (9.44%)
Genes with TMHMM (total, %) 1752 (15.54%)
Genes annotated as TF (total, %) 246 (2.18%)
Genes annotated as MEROPS protease (total, %) 313 (2.78%)
Genes annotated as CAZyme (total, %) 273 (2.42%)
Secondary metabolism gene cluster 44
CEGMA completeness (%) 98.47
BUSCO2 completeness (fungi_odb9) Complete: 83.1% (Single-copy: 82.76%, Duplicated: 0.34%), Fragmented: 10.0%, Missing: 6.9%

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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