© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 3401 |
|---|---|
| Total assembly length (Mbp) | 32.31 |
| Assembly GC content (%) | 60.35 |
| Assembly gaps (%) | 0.38 |
| L50 number (#) | 509 |
| N50 length (bp) | 17593 |
| Total repeats (#) | 25697 |
| Repetitive content (bp, %) | 1254626 (3.88%) |
| Genes | 11275 |
| Gene length (median) | 1039 |
| Transcript length (median) | 900 |
| Exon length (median) | 266 |
| CDS length (median) | 900 |
| Protein length (median) | 300 |
| Spliced genes (total, %) | 7705 (68.34%) |
| Exons per gene (median) | 2 |
| Intron length (median) | 71 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 348.92 |
| Coding content of assembly (bp, %) | 13071223 (40.45%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 3777 |
| Genes with PFAM (total, %) | 6403 (56.79%) |
| Genes with GO (total, %) | 3934 (34.89%) |
| Genes with signalP (total, %) | 1064 (9.44%) |
| Genes with TMHMM (total, %) | 1752 (15.54%) |
| Genes annotated as TF (total, %) | 242 (2.15%) |
| Genes annotated as MEROPS protease (total, %) | 313 (2.78%) |
| Genes annotated as CAZyme (total, %) | 273 (2.42%) |
| Secondary metabolism gene cluster | 44 |
| CEGMA completeness (%) | 98.47 |
| BUSCO2 completeness (fungi_odb9) | Complete: 83.1% (Single-copy: 82.76%, Duplicated: 0.34%), Fragmented: 10.0%, Missing: 6.9% |