Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 367
Total assembly length (Mbp) 35.41
Assembly GC content (%) 49.9
Assembly gaps (%) 0.01
L50 number (#) 35
N50 length (bp) 332623
Total repeats (#) 12059
Repetitive content (bp, %) 690964 (1.95%)
Genes 11170
Gene length (median) 1437
Transcript length (median) 1263
Exon length (median) 228
CDS length (median) 1263
Protein length (median) 421
Spliced genes (total, %) 9059 (81.1%)
Exons per gene (median) 3
Intron length (median) 61
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 315.47
Coding content of assembly (bp, %) 16862127 (47.62%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 4095
Genes with PFAM (total, %) 8672 (77.64%)
Genes with GO (total, %) 5600 (50.13%)
Genes with signalP (total, %) 997 (8.93%)
Genes with TMHMM (total, %) 2367 (21.19%)
Genes annotated as TF (total, %) 546 (4.89%)
Genes annotated as MEROPS protease (total, %) 374 (3.35%)
Genes annotated as CAZyme (total, %) 491 (4.4%)
Secondary metabolism gene cluster 77
CEGMA completeness (%) 99.34
BUSCO2 completeness (fungi_odb9) Complete: 99.31% (Single-copy: 98.62%, Duplicated: 0.69%), Fragmented: 0.69%, Missing: 0.0%

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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