© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 297 |
|---|---|
| Total assembly length (Mbp) | 37.11 |
| Assembly GC content (%) | 49.52 |
| Assembly gaps (%) | 0.01 |
| L50 number (#) | 23 |
| N50 length (bp) | 455986 |
| Total repeats (#) | 12944 |
| Repetitive content (bp, %) | 1332288 (3.59%) |
| Genes | 11481 |
| Gene length (median) | 1426 |
| Transcript length (median) | 1254 |
| Exon length (median) | 228 |
| CDS length (median) | 1254 |
| Protein length (median) | 418 |
| Spliced genes (total, %) | 9269 (80.73%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 61 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 309.38 |
| Coding content of assembly (bp, %) | 17165655 (46.26%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4092 |
| Genes with PFAM (total, %) | 8753 (76.24%) |
| Genes with GO (total, %) | 5662 (49.32%) |
| Genes with signalP (total, %) | 999 (8.7%) |
| Genes with TMHMM (total, %) | 2421 (21.09%) |
| Genes annotated as TF (total, %) | 555 (4.83%) |
| Genes annotated as MEROPS protease (total, %) | 379 (3.3%) |
| Genes annotated as CAZyme (total, %) | 499 (4.35%) |
| Secondary metabolism gene cluster | 76 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 98.97% (Single-copy: 97.93%, Duplicated: 1.03%), Fragmented: 1.03%, Missing: 0.0% |