Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 387
Total assembly length (Mbp) 37.63
Assembly GC content (%) 49.49
Assembly gaps (%) 0.01
L50 number (#) 41
N50 length (bp) 277855
Total repeats (#) 12697
Repetitive content (bp, %) 1125368 (2.99%)
Genes 11563
Gene length (median) 1429
Transcript length (median) 1251
Exon length (median) 228
CDS length (median) 1251
Protein length (median) 417
Spliced genes (total, %) 9346 (80.83%)
Exons per gene (median) 3
Intron length (median) 61
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 307.29
Coding content of assembly (bp, %) 17285067 (45.94%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 4094
Genes with PFAM (total, %) 8821 (76.29%)
Genes with GO (total, %) 5681 (49.13%)
Genes with signalP (total, %) 1012 (8.75%)
Genes with TMHMM (total, %) 2431 (21.02%)
Genes annotated as TF (total, %) 565 (4.89%)
Genes annotated as MEROPS protease (total, %) 375 (3.24%)
Genes annotated as CAZyme (total, %) 502 (4.34%)
Secondary metabolism gene cluster 71
CEGMA completeness (%) 99.34
BUSCO2 completeness (fungi_odb9) Complete: 98.97% (Single-copy: 98.28%, Duplicated: 0.69%), Fragmented: 1.03%, Missing: 0.0%

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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