© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 387 |
|---|---|
| Total assembly length (Mbp) | 37.63 |
| Assembly GC content (%) | 49.49 |
| Assembly gaps (%) | 0.01 |
| L50 number (#) | 41 |
| N50 length (bp) | 277855 |
| Total repeats (#) | 12697 |
| Repetitive content (bp, %) | 1125368 (2.99%) |
| Genes | 11563 |
| Gene length (median) | 1429 |
| Transcript length (median) | 1251 |
| Exon length (median) | 228 |
| CDS length (median) | 1251 |
| Protein length (median) | 417 |
| Spliced genes (total, %) | 9346 (80.83%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 61 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 307.29 |
| Coding content of assembly (bp, %) | 17285067 (45.94%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4094 |
| Genes with PFAM (total, %) | 8821 (76.29%) |
| Genes with GO (total, %) | 5681 (49.13%) |
| Genes with signalP (total, %) | 1012 (8.75%) |
| Genes with TMHMM (total, %) | 2431 (21.02%) |
| Genes annotated as TF (total, %) | 565 (4.89%) |
| Genes annotated as MEROPS protease (total, %) | 375 (3.24%) |
| Genes annotated as CAZyme (total, %) | 502 (4.34%) |
| Secondary metabolism gene cluster | 71 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 98.97% (Single-copy: 98.28%, Duplicated: 0.69%), Fragmented: 1.03%, Missing: 0.0% |