Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 363
Total assembly length (Mbp) 35.06
Assembly GC content (%) 50.07
Assembly gaps (%) 0.01
L50 number (#) 40
N50 length (bp) 291991
Total repeats (#) 11791
Repetitive content (bp, %) 664346 (1.89%)
Genes 11173
Gene length (median) 1437
Transcript length (median) 1263
Exon length (median) 225
CDS length (median) 1263
Protein length (median) 421
Spliced genes (total, %) 9092 (81.37%)
Exons per gene (median) 3
Intron length (median) 61
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 318.64
Coding content of assembly (bp, %) 16858182 (48.08%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 4089
Genes with PFAM (total, %) 8665 (77.55%)
Genes with GO (total, %) 5598 (50.1%)
Genes with signalP (total, %) 1001 (8.96%)
Genes with TMHMM (total, %) 2369 (21.2%)
Genes annotated as TF (total, %) 553 (4.95%)
Genes annotated as MEROPS protease (total, %) 364 (3.26%)
Genes annotated as CAZyme (total, %) 498 (4.46%)
Secondary metabolism gene cluster 75
CEGMA completeness (%) 99.34
BUSCO2 completeness (fungi_odb9) Complete: 98.97% (Single-copy: 98.28%, Duplicated: 0.69%), Fragmented: 1.03%, Missing: 0.0%

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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