© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 363 |
|---|---|
| Total assembly length (Mbp) | 35.06 |
| Assembly GC content (%) | 50.07 |
| Assembly gaps (%) | 0.01 |
| L50 number (#) | 40 |
| N50 length (bp) | 291991 |
| Total repeats (#) | 11791 |
| Repetitive content (bp, %) | 664346 (1.89%) |
| Genes | 11173 |
| Gene length (median) | 1437 |
| Transcript length (median) | 1263 |
| Exon length (median) | 225 |
| CDS length (median) | 1263 |
| Protein length (median) | 421 |
| Spliced genes (total, %) | 9092 (81.37%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 61 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 318.64 |
| Coding content of assembly (bp, %) | 16858182 (48.08%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4089 |
| Genes with PFAM (total, %) | 8665 (77.55%) |
| Genes with GO (total, %) | 5598 (50.1%) |
| Genes with signalP (total, %) | 1001 (8.96%) |
| Genes with TMHMM (total, %) | 2369 (21.2%) |
| Genes annotated as TF (total, %) | 553 (4.95%) |
| Genes annotated as MEROPS protease (total, %) | 364 (3.26%) |
| Genes annotated as CAZyme (total, %) | 498 (4.46%) |
| Secondary metabolism gene cluster | 75 |
| CEGMA completeness (%) | 99.34 |
| BUSCO2 completeness (fungi_odb9) | Complete: 98.97% (Single-copy: 98.28%, Duplicated: 0.69%), Fragmented: 1.03%, Missing: 0.0% |