© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Sequences in assembly | 371 |
|---|---|
| Total assembly length (Mbp) | 34.97 |
| Assembly GC content (%) | 49.97 |
| Assembly gaps (%) | 0.01 |
| L50 number (#) | 38 |
| N50 length (bp) | 270035 |
| Total repeats (#) | 11983 |
| Repetitive content (bp, %) | 640811 (1.83%) |
| Genes | 11100 |
| Gene length (median) | 1438 |
| Transcript length (median) | 1263 |
| Exon length (median) | 227 |
| CDS length (median) | 1263 |
| Protein length (median) | 421 |
| Spliced genes (total, %) | 9033 (81.38%) |
| Exons per gene (median) | 3 |
| Intron length (median) | 61 |
| Introns per spliced gene (median) | 2 |
| Gene density (genes / Mbp) | 317.45 |
| Coding content of assembly (bp, %) | 16768269 (47.96%) |
| Proteins with internal stops (total, %) | 0 (0.0%) |
| Unique PFAM domains | 4087 |
| Genes with PFAM (total, %) | 8628 (77.73%) |
| Genes with GO (total, %) | 5580 (50.27%) |
| Genes with signalP (total, %) | 991 (8.93%) |
| Genes with TMHMM (total, %) | 2359 (21.25%) |
| Genes annotated as TF (total, %) | 542 (4.88%) |
| Genes annotated as MEROPS protease (total, %) | 367 (3.31%) |
| Genes annotated as CAZyme (total, %) | 495 (4.46%) |
| Secondary metabolism gene cluster | 73 |
| CEGMA completeness (%) | 99.13 |
| BUSCO2 completeness (fungi_odb9) | Complete: 98.97% (Single-copy: 98.28%, Duplicated: 0.69%), Fragmented: 1.03%, Missing: 0.0% |