Fungal Genomics

at Utrecht University

Genome Statistics

Sequences in assembly 280
Total assembly length (Mbp) 35.81
Assembly GC content (%) 49.46
Assembly gaps (%) 0.0
L50 number (#) 42
N50 length (bp) 249900
Total repeats (#) 12162
Repetitive content (bp, %) 745512 (2.08%)
Genes 11098
Gene length (median) 1441
Transcript length (median) 1263
Exon length (median) 227
CDS length (median) 1263
Protein length (median) 421
Spliced genes (total, %) 9020 (81.28%)
Exons per gene (median) 3
Intron length (median) 61
Introns per spliced gene (median) 2
Gene density (genes / Mbp) 309.92
Coding content of assembly (bp, %) 16789167 (46.88%)
Proteins with internal stops (total, %) 0 (0.0%)
Unique PFAM domains 4086
Genes with PFAM (total, %) 8605 (77.54%)
Genes with GO (total, %) 5553 (50.04%)
Genes with signalP (total, %) 985 (8.88%)
Genes with TMHMM (total, %) 2339 (21.08%)
Genes annotated as TF (total, %) 542 (4.88%)
Genes annotated as MEROPS protease (total, %) 363 (3.27%)
Genes annotated as CAZyme (total, %) 492 (4.43%)
Secondary metabolism gene cluster 73
CEGMA completeness (%) 99.34
BUSCO2 completeness (fungi_odb9) Complete: 98.62% (Single-copy: 97.93%, Duplicated: 0.69%), Fragmented: 1.38%, Missing: 0.0%

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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